Input TCR data are formatted as follow
#CDR3b  TRBV  TRBJ  CDR3a  subject:condition count
CSARDQGGAGNQPQHF	TRBV20-1	TRBJ1-5	CAVGVGYKLSF	01/0906:MtbLys	1
All fields are tab-delimited except that subject and condition are delimited with ":". Condition can be anything such as tissue type, cell subset or treatment et al. CDR3b, TRBV, subject, and count are required. Other fields can be replaced with "NA".
Demo input TCR dataset: TCR
Input HLA data are formatted as follow
#subject allele1 allele2
09/0217	DPA1*01:03	DPA1*02:02	DPB1*04:01	DPB1*14:01	DQA1*01:02	DQA1*01:03	DQB1*06:04	DQB1*06:02	DRB1*13:02	DRB1*13:01	DRB3*03:01	DRB3*02:02
All fields are tab-delimited. Demo input HLA dataset: HLA
Result clusters are formatted as follow
#index,pattern,Fisher_score,number_subject, number_unique_cdr3, final_score,hla_score,vb_score,expansion_score,length_score,cluster_size_score,type,ulTcRb,TcRb,V,J,TcRa,Sample,Freq,HLA-A,HLA-B,HLA-C,HLA-DPA1,HLA-DPB1,HLA-DQA1,HLA-DQB1,HLA-DRB1,HLA-DRB3,HLA-DRB4,HLA-DRB5
1,SVAL,4.4e-19,10,16,5.7e-13,4.0e-04,1.0e-03,4.5e-01,3.7e-02,8.6e-05,motif-SVAL,CASSVaLASGANVLTF,CASSVALASGANVLTF,TRBV9,TRBJ2-6,CAGAGGGGFKTIF,02/0152:MegaIL2,2.000000,-,-,-,DPA1*01:03/DPA1*04:01,DPB1*04:01/DPB1*296:01,DQA1*01:02/DQA1*05:01,DQB1*02:01/DQB1*06:01!,DRB1*03:01/DRB1*15:01!,DRB3*01:01,-,DRB5*01:01!
Demo result: cluster